PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0067s0121.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 461aa    MW: 48941.2 Da    PI: 6.9016
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0067s0121.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.4e-112550126
                          --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                          ++++ C +++rtG C +G +C+F+H+
  Sphfalx0067s0121.3.p 25 PGEPDCGYYMRTGLCGFGISCRFNHP 50
                          5789*********************8 PP

2zf-CCCH37.83.1e-1277101226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           +++ C++f++tGtCk+G++Ck++H+
  Sphfalx0067s0121.3.p  77 GQPDCQYFLKTGTCKFGATCKYHHP 101
                           5799********************8 PP

3zf-CCCH38.71.6e-12125148427
                           ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                           + C +++rtG CkyG +CkF+H++
  Sphfalx0067s0121.3.p 125 KDCAYYMRTGSCKYGVTCKFHHPQ 148
                           68********************97 PP

4zf-CCCH32.71.3e-10286312127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C+++ +tG Ck+G +C+++H++
  Sphfalx0067s0121.3.p 286 PGQPECQYYIKTGDCKFGVTCRYHHPK 312
                           5789*********************96 PP

5zf-CCCH34.82.7e-11333357226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           + ++C+f+ r+G+Ck+G++CkF H+
  Sphfalx0067s0121.3.p 333 GSPPCNFYTRYGICKFGPTCKFDHP 357
                           679*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-52451IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.532452IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-82650IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-52952IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.38575103IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-675102IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-1078101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-679104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-481101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6120149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.573121149IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5123148IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10125148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5127147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455285313IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4285312IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-7287312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5289314IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6331358IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601331359IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8333357IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5334359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4336356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MTTLQQPEEM DHGGGGPAAS YPERPGEPDC GYYMRTGLCG FGISCRFNHP SNGGNLAAAL  60
AAQGGSSRGG EYPERLGQPD CQYFLKTGTC KFGATCKYHH PSDKAGSIGQ VQINVLGFPL  120
RLEEKDCAYY MRTGSCKYGV TCKFHHPQPA AMGALVSMSG SSLYATPATQ SSSTPQPYPA  180
GLPSWPIAAR APYLQVPSTF APVIVPPLQG VVSMTGWNTY QGPVNNLPTP EEQQHSLGSR  240
FPYGGLEMDA VSGYAPYIQG SSAMGLPVLQ PQPIHVHKET VFPERPGQPE CQYYIKTGDC  300
KFGVTCRYHH PKDRTTTAPT CVLNSLGLPL RPGSPPCNFY TRYGICKFGP TCKFDHPLRG  360
LTYGSPASLQ TDIPVGGPYP SGSLLTVLTP SSSSEVPQEV SNTASPSDEP ASEEVSGCIP  420
LRAIPDSAVM RTMAASNLLA QGTRSEMAIN SPATEILDAS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001768387.11e-142predicted protein, partial
SwissprotQ9SWF91e-126ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA9SQ001e-142A9SQ00_PHYPA; Predicted protein (Fragment)
STRINGPP1S102_155V6.11e-147(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-103zinc finger protein 1